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Markov Chain Monte Carlo Simulations And Their Statistical Analysis 
Berg, Bernd A. ¤Ó World Scientific
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9789812389350/9812389350
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  • Prefacep. vii
    Sampling, Statistics and Computer Codep. 1
    Probability Distributions and Samplingp. 1
    Assignments for section 1.1p. 5
    Random Numbersp. 6
    Assignments for section 1.2p. 12
    About the Fortran Codep. 13
    CPU time measurements under Linuxp. 22
    Gaussian Distributionp. 23
    Assignments for section 1.4p. 25
    Confidence Intervalsp. 26
    Assignment for section 1.5p. 30
    Order Statistics and HeapSortp. 30
    Assignments for section 1.6p. 34
    Functions and Expectation Valuesp. 35
    Moments and Tchebychev's inequalityp. 36
    The sum of two independent random variablesp...
    Characteristic functions and sums of N independent random variablesp. 41
    Linear transformations, error propagation and covariancep. 43
    Assignments for section 1.7p. 46
    Sample Mean and the Central Limit Theoremp. 47
    Probability density of the sample meanp. 47
    The central limit theoremp. 50
    Counter examplep. 51
    Binningp. 52
    Assignments for section 1.8p. 53
    Error Analysis for Independent Random Variablesp. 54
    Gaussian Confidence Intervals and Error Barsp. 54
    Estimator of the variance and biasp. 56
    Statistical error bar routines (steb)p. 57
    Ratio of two means with error barsp. 60
    Gaussian difference testp. 60
    Combining more than two data pointsp. 62
    Assignments for section 2.1p. 64
    The X[superscript 2] Distributionp. 66
    Sample variance distributionp. 67
    The X[superscript 2] distribution function and probability densityp. 70
    Assignments for section 2.2p. 72
    Gosset's Student Distributionp. 73
    Student difference testp. 77
    Assignments for section 2.3p. 81
    The Error of the Error Barp. 81
    Assignments for section 2.4p. 84
    Variance Ratio Test (F-test)p. 85
    F ratio confidence limitsp. 88
    Assignments for section 2.5p. 89
    When are Distributions Consistent?p. 89
    X[superscript 2] Testp. 89
    The one-sided Kolmogorov testp. 92
    The two-sided Kolmogorov testp. 98
    Assignments for section 2.6p. 101
    The Jackknife Approachp. 103
    Bias corrected estimatorsp. 106
    Assignments for section 2.7p. 108
    Determination of Parameters (Fitting)p. 109
    Linear regressionp. 111
    Confidence limits of the regression linep. 114
    Related functional formsp. 115
    Examplesp. 117
    Levenberg-Marquardt fittingp. 121
    Examplesp. 125
    Assignments for section 2.8p. 127
    Markov Chain Monte Carlop. 128
    Preliminaries and the Two-Dimensional Ising Modelp. 129
    Lattice labelingp. 133
    Sampling and Re-weightingp. 138
    Important configurations and re-weighting rangep. 141
    Assignments for section 3.1p. 142
    Importance Samplingp. 142
    The Metropolis algorithmp. 147
    The O(3) [sigma]-model and the heat bath algorithmp. 148
    Assignments for section 3.2p. 152
    Potts Model Monte Carlo Simulationsp. 152
    The Metropolis codep. 156
    Initializationp. 158
    Updating routinesp. 160
    Start and equilibrationp. 163
    More updating routinesp. 164
    Heat bath codep. 165
    Timing and time series comparison of the routinesp. 168
    Energy references, data production and analysis codep. 169
    2d Ising modelp. 171
    Data analysisp. 173
    2d 4-state and 10-state Potts modelsp. 174
    3d Ising modelp. 177
    3d 3-state Potts modelp. 177
    4d Ising model with non-zero magnetic fieldp. 178
    Assignments for section 3.3p. 179
    Continuous Systemsp. 181
    Simple Metropolis code for the O(n) spin modelsp. 182
    Metropolis code for the XY modelp. 186
    Timing, discretization and rounding errorsp. 187
    Acceptance ratep. 189
    Heat bath code for the O(3) modelp. 192
    Rounding errorsp. 194
    Assignments for section 3.4p. 194
    Error Analysis for Markov Chain Datap. 196
    Autocorrelationsp. 197
    Integrated autocorrelation time and binningp. 202
    Illustration: Metropolis generation of normally distributed datap. 205
    Autocorrelation functionp. 205
    Integrated autocorrelation timep. 207
    Corrections to the confidence intervals of the binning procedurep. 210
    Self-consistent versus reasonable error analysisp. 211
    Assignments for section 4.1p. 213
    Analysis of Statistical Physics Datap. 214
    The d = 2 Ising model off and on the critical pointp. 214
    Comparison of Markov chain MC algorithmsp. 218
    Random versus sequential updatingp. 218
    Tuning the Metropolis acceptance ratep. 219
    Metropolis versus heat bath: 2d q = 10 Pottsp. 221
    Metropolis versus heat bath: 3d Isingp. 222
    Metropolis versus heat bath: 2d O(3) [sigma] modelp. 223
    Small fluctuationsp. 224
    Assignments for section 4.2p. 227
    Fitting of Markov Chain Monte Carlo Datap. 229
    One exponential autocorrelation timep. 230
    More than one exponential autocorrelation timep. 233
    Assignments for section 4.3p. 235
    Advanced Monte Carlop. 236
    Multicanonical Simulationsp. 236
    Recursion for the weightsp. 239
    Fortran implementationp. 244
    Example runsp. 247
    Performancep. 250
    Re-weighting to the canonical ensemblep. 251
    Energy and specific heat calculationp. 254
    Free energy and entropy calculationp. 261
    Time series analysisp. 264
    Assignments for section 5.1p. 267
    Event Driven Simulationsp. 268
    Computer implementationp. 270
    MC runs with the EDS codep. 276
    Assignments for section 5.2p. 278
    Cluster Algorithmsp. 279
    Autocorrelation timesp. 284
    Assignments for section 5.3p. 286
    Large Scale Simulationsp. 287
    Assignments for section 5.4p. 289
    Parallel Computingp. 292
    Trivially Parallel Computingp. 292
    Message Passing Interface (MPI)p. 294
    Parallel Temperingp. 303
    Computer implementationp. 305
    Illustration for the 2d 10-state Potts modelp. 310
    Gaussian Multiple Markov chainsp. 315
    Assignments for section 6.3p. 316
    Checkerboard algorithmsp. 316
    Assignment for section 6.4p. 318
    Conclusions, History and Outlookp. 319
    Computational Supplementsp. 326
    Calculation of Special Functionsp. 326
    Linear Algebraic Equationsp. 328
    More Exercises and some Solutionsp. 331
    Exercisesp. 331
    Solutionsp. 333
    More Fortran Routinesp. 338
    Bibliographyp. 339
    Indexp. 349
    Table of Contents provided by Ingram. All Rights Reserved.
  • Berg, Bernd A. [Àú]
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